science

For the most up-to-date list of papers and pre-prints I have contributed to, please visit my Google Scholar profile. 

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Published Papers

- 2023 -

• Cohen LE, Fagre AC, Chen B, Carlson CJ, Becker DJ. 2023. Coronavirus sampling and surveillance in bats from 1996-2019: a systematic review and meta-analysis. Nature Microbiology 8(6):1176-1186. DOI: 10.1038/s41564-023-01375-1.

• Fagre, A. C., Lehmann, J., Staples, J.E., & Lindsay N. (2023). West Nile virus and other nationally notifiable arboviral diseases—United States, 2021. MMWR. Morbidity and Mortality Weekly Report, 72.

• Fagre, A. C., Islam, A., Reeves, W. K., Kading, R. C., Plowright, R. K., Gurley, E. S., & McKee, C. D. (2023). Bartonella Infection in Fruit Bats and Bat Flies, Bangladesh. Microbial Ecology, 86(4), 2910-2922.

• Mac, V. V., Wong, J. M., Volkman, H. R., Perez-Padilla, J., Wakeman, B., Delorey, M., Biggerstaff, B., Fagre AC, ... & Adams, L. E. (2023). Notes From the Field: Prevalence of Previous Dengue Virus Infection Among Children and Adolescents—US Virgin Islands, 2022. Morbidity and Mortality Weekly Report, 72(11), 288.

• Chen, B., Sweeny, A. R., Wu, V. Y., Christofferson, R. C., Ebel, G., Fagre, A. C., ... & Carlson, C. J. (2023). Exploring the Mosquito–Arbovirus Network: A Survey of Vector Competence Experiments. The American Journal of Tropical Medicine and Hygiene, 108(5), 987.

• Burke, B., Rocha, S. M., Zhan, S., Eckley, M., Reasoner, C., Addetia, A., Lewis, J., Fagre, A., ... & Schountz, T. (2023). Regulatory T cell-like response to SARS-CoV-2 in Jamaican fruit bats (Artibeus jamaicensis) transduced with human ACE2. PLoS Pathogens, 19(10), e1011728.

Consortium authorship

• Gregor, R., Johnston, J., Coe, L. S. Y., Evans, N., Forsythe, D., Jones, R., Muratore, D., de Oliveira, B. F. R., Szabo, R., Wan, Y., Williams, J., Chappell, C. R., Matsuda, S. B., Ortiz Alvarez de la Campa, M., Queer and Trans in Microbiology Consortium, & Weissman, J. L. (2023). Building a queer- and trans-inclusive microbiology conference. mSystems, 8(5), e00433-23.

- 2022 -

• Chen B, Sweeny A, Wu VY, Christofferson RC, Ebel E, Fagre AC, Gallichote E, Kading R, Ryan SJ, & Carlson CJ. Exploring the mosquito-arbovirus network: a survey of vector competence experiments. Preprint posted to bioRxiv on June 14, 2022. Preprint DOI: 10.1101/2022.05.19.492743

• Wu VY, Chen B, Christofferson R, Ebel G, Fagre A, Gallichotte E, Sweeny AR, Carlson CJ, & Ryan SJ. A minimum data standard for vector competence experiments. Preprint posted to EcoEvoRxiv on June 14, 2022. Preprint DOI: 10.32942/osf.io/ex2s9

• Mayer, T, Moskaluk A, Kolby J, Russell M, Schaffer P, & Fagre AC. First recorded outbreak of Veronaea botryosa in North American amphibians: clinicopathologic features of a rare cause of phaeohyphomycosis in captive White’s tree frogs (Litoria caerulea) . Medical Mycology Case Reports 38, 13-17. DOI: 10.1016/j.mmcr.2022.09.002  

• Fagre AC, Cohen LE, Eskew EA, Farrell M, Glennon E, Joseph MB, Frank HK, Ryan SJ, Carlson CJ, & Albery G. 2022. Spillback in the Anthropocene: the risk of human-to-wildlife pathogen transmission for conservation and public health. Ecology Letters, in press.

• Carlson CJ, Gibb RJ, Albery GF, Brierly L, Connor RP, Dallas TA, Eskew EA, Fagre AC, Farrell MJ, Frank HK, Muylaert RL, Poisot T, Rasmussen AL, Ryan SJ, & Seifert SN. 2022. The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations. Mbio 13(2), e02985-21. DOI: 10.1128/mbio.02985-21

• Rocha SM, Fagre AC, Latham AS, Popichak KA, McDermott CP, Dawson CC, Cummings JE, Lewis J, Reigan P, Aboellail TA, Kading RC, Schountz T, Theise ND, Slayden RA, & Tjalkens RB. 2022. A novel glucocorticoid and androgen receptor modulator reduces viral entry and innate immune inflammatory responses in the Syrian hamster model of SARS-CoV-2. Frontiers in Immunology, online.

• Becker DJ, Albery GF, Sjodin AR, Poisot T, Bergner LM, Chen B, Cohen LE, Dallas TA, Eskew EA, Fagre AC, Farrell MJ, Guth S, Han BA, Simmons NB, Stock M, Teeling EC, & Carlson CJ. 2022. Optimizing predictive models to prioritise viral discovery in zoonotic reservoirs. The Lancet Microbe, in press.

- 2021 -

• Albery GF, Becker DJ, Brierley L, Brook CE, Christofferson RC, Cohen LE, Dallas TA, Eskew EA, Fagre A, Farrell MJ, Glennon E, Guth S, Joseph MB, Mollentze N, Neely BA, Poisot T, Rasmussen AL, Ryan SJ, Seifert S, Sjodin AR, Sorrell EM, & Carlson CJ. 2021. The science of the host-virus network. Nature Microbiology 6(12), 1483-1492. DOI:  

• Carlson C, Farrell M, Grange Z, Han B, Mollentze N, Phelan A, Rasmussen A, Albery G, Bett B, Brett-Major D, Cohen L, Dallas T, Eskew E, Fagre A, Forbes K, Gibb R, Halabi S, Hammer CC, Katz R, Kindrachuk J, Muylaert R, Nutter FB, Ogola J, Olival KJ, Rourke M, Ryan SJ, Ross N, Seifert SN, Sironen T, Standley CJ, Taylor K, Center M, & Webala P. 2021. The future of zoonotic risk prediction. Philosophical Transactions of the Royal Society B 376(1837), 20200358. 

• Miller MR, Fagre AC, Clarkson TC, Markle ED, & Foy BD. 2021. Three immunocompetent small animal models that do not support Zika virus replication. Pathogens, 10(8), 971.

• Tucker C, Fagre A, Wittemyer G, Webb T, Okoth Abworo E, & VandeWoude S. 2021. Parallel pandemics illustrate the need for One Health solutions. Frontiers in Microbiology, 12, 718546.

• Fagre AC†, Lewis J†, Eckley M†, Zhan S, Rocha SM, Sexton NR, Burke B, Geiss B, Peersen O, Kading RC, Rovnak J, Ebel GD, Tjalkens R, Aboellail T, Schountz T. 2021. SARS-CoV-2 infection, neuropathogenesis and transmission among deer mice: Implications for spillback to New World rodents. PLOS Pathogens, 17(5): e1009585.

• Fagre AC, Lewis J, Miller MR, Mossel EC, Lutwama JJ, Nyakarahuka L, Nakayiki T, Kityo R, Nalikka B, Towner JS, Amman BR, Sealy TK, Foy B, Schountz T, Anderson J, & Kading RC. 2021. Subgenomic flavivirus RNA (sfRNA) associated with Asian lineage Zika virus identified in three species of Ugandan bats (family Pteropodidae). Scientific Reports 11, 8370.

• Fagre AC, Cheleuitte-Nieves C, Pugazhenthi U, Crim MJ, Henderson KS, Fong DL, Leszczynski JK, Schurr MJ, Daniels JB, Manuel CA. 2021. Antimicrobial Susceptibility of Corynebacterium bovis Isolates from Immunodeficient Rodents. Comparative Medicine, 71(3), 210-215.

- 2020 -

• Fagre AC, Manhard J, Adams R, Eckley M, Zhan S, Lewis J, Rocha SM, Woods C, Kuo K, Liao W, Li L, Corper A, Challa D, Mount E, Tamanut C, Tjalkens RB, Aboellail T, Fan X, & Schountz T. 2020. A potent SARS-CoV-2 neutralizing human monoclonal antibody that reduces viral burden and disease severity in Syrian hamsters. Frontiers in Immunology 11, 614256.

• Fagre AC, Mayo CE, Pabilonia KL, & Landolt GA. 2020. Seroprevalence of Leptospira spp. in Colorado equids and association with clinical disease. Journal of Veterinary Diagnostic Investigation, 32(5):718-721.

- 2019 -

• Fagre AC, Pabilonia KL, Johnston MS, Morley PS, & Burgess BA. 2019. Comparison of detection methods for Salmonella enterica shedding among reptilian patients at a veterinary teaching hospital. Journal of Veterinary Diagnostic Investigation, online.

• Chiu E, Lee JS, Malmberg J, Fagre AC, Dannemiller NG, Stuchin M, Golas B, Huyvaert KP. 2019. Teaching wildlife disease outbreak response through a collaborative One Health workshop. Journal of Veterinary Medical Education, online.

• Hartman DA, Lauren R, deMaria J, Borland E, Bergren NA, Fagre AC, Robb L, Webb C, & Kading R. 2019. Entomological risk factors for potential transmission of Rift Valley fever virus around concentrations of livestock in Colorado. Transboundary and Emerging Diseases, online.

• Fitak RR, Antonides JD, Baitchman EJ, Bonaccorso, Braun J, Kubiski S, Chiu E, Fagre AC… & Pecon-Slattery J. 2019. The expectations and challenges of wildlife disease research in the era of genomics: Forecasting with a horizon scan-like exercise. Journal of Heredity, esz001.

• Fagre AC, Lee JS, Kityo RM, Bergren NA, Mossel EC, Nakayiki T, Nalikka B, Nyakarahuka L, Gilbert, AT, Peterhans JK, Crabtree MB, Towner JS, Amman BR, Sealy TK, Schuh AJ, Nichol ST, Lutwama JJ, Miller BR, & Kading RC. 2019. Discovery and characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a novel virus from a Ugandan bat. Viruses, 11, 209.

• Fagre AC & Kading RC. 2019. Can bats serve as reservoirs for arboviruses? Viruses 2019, 11, 215.

† These authors contributed equally to this work.

papers resulting from research experiences during veterinary school

• Fagre AC, Olea-Popelka FJ, & Ruch-Gallie R. 2017 Intake procedures in Colorado animal shelters. Animals 2017,7(5), 38.

• Fagre AC, Duncan C, Patyk K, Nol P, Hueffer K, & Atwood T. 2015. Infectious agents in polar bears (Ursus Maritimus): A systemic review of the literature. Ecohealth, 12(3), 528-539.

• De Lucca T, Rodrigues Alves RC, Castagna C, Presotto D, De Nadai DV, Fagre A… & Dias RA. 2012. Discussing the rabies surveillance system in Brazil: an experience of surveillance towards bats after the halt of massive vaccination of dogs and cats in Campinas, São Paulo. Preventive Veterinary Medicine, 111(1-2), 126-133.